Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers UM128
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 18
Contig Count 105
N50 Contigs 126,820 bp
Longest Contig 436,936 bp
Scaffold Count 63
N50 Scaffolds 284,163 bp
Longest Scaffold 537,870 bp
Genome Size 4,802,009 bp
Protein Count 4,528
Coding Density 88.01%
GC Percentage 50.47%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157172v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04449840
Country Canada: Winnipeg
Date 2016-2-24
Genbank Assembly Accession GCA_001571725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Ulcerative colitis patient gut tissue biopsy
Latitude Longitude 49.90 N 97.14 W
Molecule Count N/A
CDS Count 4,930
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 42
Species Taxid 562
SSU Count 0
Submitter University of Toronto
Taxid 562
Total Gap Length 2640
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRXU00000000.1