Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CD26
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 97.74%
CheckM Contamination 1.18%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 446
N50 Contigs 22,870 bp
Longest Contig 113,553 bp
Scaffold Count 164
N50 Scaffolds 88,241 bp
Longest Scaffold 312,933 bp
Genome Size 5,055,681 bp
Protein Count 4,861
Coding Density 85.38%
GC Percentage 50.52%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157168v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04449841
Country Canada: Winnipeg
Date 2016-2-24
Genbank Assembly Accession GCA_001571685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Crohn s disease patient gut tissue biopsy
Latitude Longitude 49.90 N 97.14 W
Molecule Count N/A
CDS Count 5,234
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 282
Species Taxid 562
SSU Count 1
Submitter University of Toronto
Taxid 562
Total Gap Length 16260
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRXV00000000.1