Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CD3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 18
Contig Count 124
N50 Contigs 129,017 bp
Longest Contig 320,544 bp
Scaffold Count 65
N50 Scaffolds 177,291 bp
Longest Scaffold 464,702 bp
Genome Size 4,888,602 bp
Protein Count 4,619
Coding Density 88.05%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157166v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04449838
Country Canada: Winnipeg
Date 2016-2-24
Genbank Assembly Accession GCA_001571665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Crohn s disease patient gut tissue biopsy
Latitude Longitude 49.90 N 97.14 W
Molecule Count N/A
CDS Count 5,020
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 59
Species Taxid 562
SSU Count 0
Submitter University of Toronto
Taxid 562
Total Gap Length 2213
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRXS00000000.1