Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CD44
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 143
N50 Contigs 104,959 bp
Longest Contig 294,840 bp
Scaffold Count 90
N50 Scaffolds 139,917 bp
Longest Scaffold 337,542 bp
Genome Size 4,931,096 bp
Protein Count 4,609
Coding Density 87.93%
GC Percentage 50.47%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM157164v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04449835
Country Canada: Winnipeg
Date 2016-2-24
Genbank Assembly Accession GCA_001571645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Crohn s disease patient gut tissue biopsy
Latitude Longitude 49.90 N 97.14 W
Molecule Count N/A
CDS Count 4,990
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 53
Species Taxid 562
SSU Count 2
Submitter University of Toronto
Taxid 562
Total Gap Length 2764
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRXP00000000.1