Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CFSAN025090
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 40.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 298
N50 Contigs 103,858 bp
Longest Contig 250,621 bp
Scaffold Count 298
N50 Scaffolds 103,858 bp
Longest Scaffold 250,621 bp
Genome Size 5,639,258 bp
Protein Count 5,742
Coding Density 87.24%
GC Percentage 50.37%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM157149v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04338508
Country USA
Date 2016-2-24
Genbank Assembly Accession GCA_001571495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,213
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter FDA/CFSAN
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LPTU00000000.1