Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
NCBI Strain Identifiers NGUA29
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 33.33
5S Count 9
16S Count 1
23S Count 11
tRNA Count 20
Contig Count 146
N50 Contigs 200,955 bp
Longest Contig 357,282 bp
Scaffold Count 146
N50 Scaffolds 200,955 bp
Longest Scaffold 357,282 bp
Genome Size 4,699,130 bp
Protein Count 4,429
Coding Density 87.34%
GC Percentage 52.24%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM157010v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00043366
Country None
Date 2016-1-22
Genbank Assembly Accession GCA_001570105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,710
Refseq Category na
Seq Rel Date 2016/01/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 8
Submitter South Dakota State University
Taxid 28901
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BCPB00000000.1