Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
NCBI Strain Identifiers NGUA05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 66.67
5S Count 10
16S Count 2
23S Count 9
tRNA Count 20
Contig Count 130
N50 Contigs 394,557 bp
Longest Contig 712,378 bp
Scaffold Count 130
N50 Scaffolds 394,557 bp
Longest Scaffold 712,378 bp
Genome Size 4,707,314 bp
Protein Count 4,438
Coding Density 87.41%
GC Percentage 52.19%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156962v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00043382
Country None
Date 2016-1-22
Genbank Assembly Accession GCA_001569625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,729
Refseq Category na
Seq Rel Date 2016/01/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 11
Submitter South Dakota State University
Taxid 28901
Total Gap Length 0
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BCOD00000000.1