Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira alstonii
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira alstonii
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira alstonii
NCBI Strain Identifiers 56661
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000347175.1)
Genome Characteristics
CheckM Completeness 98.82%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 224
N50 Contigs 58,662 bp
Longest Contig 221,886 bp
Scaffold Count 224
N50 Scaffolds 58,662 bp
Longest Scaffold 221,886 bp
Genome Size 4,247,829 bp
Protein Count 3,854
Coding Density 85.83%
GC Percentage 42.61%
Ambiguous Bases N/A
GTDB representative GCA_000347175.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156939v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02947766
Country China
Date 2016-2-24
Genbank Assembly Accession GCA_001569395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Shandong China
Latitude Longitude 36.40 N 117.00 E
Molecule Count N/A
CDS Count 3,996
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 28452
SSU Count 1
Submitter Chinese National Human Genome Center at Shanghai
Taxid 28452
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQRS00000000.1