Leptospira noguchii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira noguchii
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira noguchii
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira noguchii
NCBI Strain Identifiers 56189
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000306255.2)
Genome Characteristics
CheckM Completeness 96.47%
CheckM Contamination 1.28%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 298
N50 Contigs 34,704 bp
Longest Contig 121,972 bp
Scaffold Count 298
N50 Scaffolds 34,704 bp
Longest Scaffold 121,972 bp
Genome Size 4,687,065 bp
Protein Count 4,021
Coding Density 78.31%
GC Percentage 35.27%
Ambiguous Bases N/A
GTDB representative GCA_000306255.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156921v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02947902
Country Peru
Date 2016-2-24
Genbank Assembly Accession GCA_001569215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Peru
Latitude Longitude 12.02 S 77.01 W
Molecule Count N/A
CDS Count 4,241
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 28182
SSU Count 1
Submitter Chinese National Human Genome Center at Shanghai
Taxid 28182
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQRC00000000.1