Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
NCBI Strain Identifiers 56624
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900156205.1)
Genome Characteristics
CheckM Completeness 96.47%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 406
N50 Contigs 30,168 bp
Longest Contig 103,877 bp
Scaffold Count 406
N50 Scaffolds 30,168 bp
Longest Scaffold 103,877 bp
Genome Size 4,941,082 bp
Protein Count 4,231
Coding Density 75.87%
GC Percentage 35.02%
Ambiguous Bases N/A
GTDB representative GCA_900156205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156869v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02949537
Country China
Date 2016-2-24
Genbank Assembly Accession GCA_001568695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Yunnan; China
Latitude Longitude 25.04 N 102.42 E
Molecule Count N/A
CDS Count 4,622
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 173
SSU Count 1
Submitter Chinese National Human Genome Center at Shanghai
Taxid 173
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQPH00000000.1