Leptospira alstonii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira alstonii
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira alstonii
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira alstonii
NCBI Strain Identifiers 56667
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000347175.1)
Genome Characteristics
CheckM Completeness 98.82%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 217
N50 Contigs 49,519 bp
Longest Contig 196,578 bp
Scaffold Count 217
N50 Scaffolds 49,519 bp
Longest Scaffold 196,578 bp
Genome Size 4,430,125 bp
Protein Count 4,099
Coding Density 85.98%
GC Percentage 42.51%
Ambiguous Bases N/A
GTDB representative GCA_000347175.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156845v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02947767
Country China
Date 2016-2-24
Genbank Assembly Accession GCA_001568455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sichuan; China
Latitude Longitude 30.67 N 104.06 E
Molecule Count N/A
CDS Count 4,212
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 28452
SSU Count 1
Submitter Chinese National Human Genome Center at Shanghai
Taxid 28452
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQRU00000000.1