Leptospira borgpetersenii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira borgpetersenii
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira borgpetersenii
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira borgpetersenii
NCBI Strain Identifiers 56676
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003046425.1)
Genome Characteristics
CheckM Completeness 98.82%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 301
N50 Contigs 20,258 bp
Longest Contig 138,088 bp
Scaffold Count 301
N50 Scaffolds 20,258 bp
Longest Scaffold 138,088 bp
Genome Size 3,750,210 bp
Protein Count 3,374
Coding Density 82.21%
GC Percentage 40.29%
Ambiguous Bases N/A
GTDB representative GCA_003046425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156830v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02947784
Country China
Date 2016-2-24
Genbank Assembly Accession GCA_001568305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Yunnan; China
Latitude Longitude 25.04 N 102.42 E
Molecule Count N/A
CDS Count 3,625
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 174
SSU Count 1
Submitter Chinese National Human Genome Center at Shanghai
Taxid 174
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQRA00000000.1