Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
NCBI Strain Identifiers J50
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900156205.1)
Genome Characteristics
CheckM Completeness 96.47%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 100.0
5S Count 1
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 325
N50 Contigs 34,286 bp
Longest Contig 91,111 bp
Scaffold Count 325
N50 Scaffolds 34,286 bp
Longest Scaffold 91,111 bp
Genome Size 4,758,101 bp
Protein Count 4,006
Coding Density 75.75%
GC Percentage 35.04%
Ambiguous Bases N/A
GTDB representative GCA_900156205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156780v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02949578
Country China: Jiangxi
Date 2016-2-24
Genbank Assembly Accession GCA_001567805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 28.40 N 115.55 E
Molecule Count N/A
CDS Count 4,397
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 173
SSU Count 3
Submitter Chinese National Human Genome Center at Shanghai
Taxid 173
Total Gap Length 0
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQPB00000000.1