Lactobacillus crispatus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
NCBI Strain Identifiers JCM 5810
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002088015.1)
Genome Characteristics
CheckM Completeness 99.03%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 3
23S Count 3
tRNA Count 19
Contig Count 7
N50 Contigs 1,243,967 bp
Longest Contig 1,243,967 bp
Scaffold Count 7
N50 Scaffolds 1,243,967 bp
Longest Scaffold 1,243,967 bp
Genome Size 2,048,451 bp
Protein Count 1,984
Coding Density 88.00%
GC Percentage 36.80%
Ambiguous Bases 14
GTDB representative GCA_002088015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156709v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04498476
Country Japan
Date 2016-2-24
Genbank Assembly Accession GCA_001567095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,958
Refseq Category na
Seq Rel Date 2016/02/24
Spanned Gaps 0
Species Taxid 47770
SSU Count 3
Submitter University of Illinois
Taxid 47770
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSVK00000000.1