Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers SaT040
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 2
N50 Contigs 5,061,821 bp
Longest Contig 5,061,821 bp
Scaffold Count 2
N50 Scaffolds 5,061,821 bp
Longest Scaffold 5,061,821 bp
Genome Size 5,176,044 bp
Protein Count 4,879
Coding Density 87.66%
GC Percentage 50.65%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM156661v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04381849
Country USA: Burlington
Date 2016-2-23
Genbank Assembly Accession GCA_001566615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 44.4758 N 73.2119 W
Molecule Count 2
CDS Count 5,270
Refseq Category na
Seq Rel Date 2016/02/23
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter University of Minnesota
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None