Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers V13
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 109
N50 Contigs 168,754 bp
Longest Contig 324,092 bp
Scaffold Count 96
N50 Scaffolds 176,589 bp
Longest Scaffold 496,650 bp
Genome Size 4,950,893 bp
Protein Count 4,746
Coding Density 87.65%
GC Percentage 52.10%
Ambiguous Bases 7
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5275_1#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA773505
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001566055.1
Genome Category Isolate
Genome Representation full
Isolate V13
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,058
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 13
Species Taxid 28901
SSU Count 1
Submitter SC
Taxid 85569
Total Gap Length 1010
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTOV00000000.1