Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers H89
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 191
N50 Contigs 55,599 bp
Longest Contig 216,249 bp
Scaffold Count 110
N50 Scaffolds 149,801 bp
Longest Scaffold 455,122 bp
Genome Size 4,962,302 bp
Protein Count 4,770
Coding Density 87.50%
GC Percentage 52.06%
Ambiguous Bases 57
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5299_6#5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA773629
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001565955.1
Genome Category Isolate
Genome Representation full
Isolate H89
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,078
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 81
Species Taxid 28901
SSU Count 1
Submitter SC
Taxid 85569
Total Gap Length 3439
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTPN00000000.1