Listeria monocytogenes_B
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes_B
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
NCBI Strain Identifiers LM06-01598
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000307025.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 28
N50 Contigs 479,619 bp
Longest Contig 801,529 bp
Scaffold Count 28
N50 Scaffolds 479,619 bp
Longest Scaffold 801,529 bp
Genome Size 2,945,994 bp
Protein Count 2,899
Coding Density 90.03%
GC Percentage 37.90%
Ambiguous Bases N/A
GTDB representative GCA_000307025.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name LM06-01598 assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3540847
Country None
Date 2016-1-29
Genbank Assembly Accession GCA_001564755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,942
Refseq Category na
Seq Rel Date 2016/01/29
Spanned Gaps 0
Species Taxid 1639
SSU Count 1
Submitter INSTITUT PASTEUR
Taxid 1639
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYVE00000000.1