Lactobacillus crispatus
Isolate HQ 5S/16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
NCBI Strain Identifiers PSS7772C
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002088015.1)
Genome Characteristics
CheckM Completeness 99.03%
CheckM Contamination 2.77%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 14
Contig Count 229
N50 Contigs 23,812 bp
Longest Contig 80,273 bp
Scaffold Count 215
N50 Scaffolds 23,944 bp
Longest Scaffold 90,789 bp
Genome Size 2,389,793 bp
Protein Count 2,496
Coding Density 88.24%
GC Percentage 36.47%
Ambiguous Bases N/A
GTDB representative GCA_002088015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156361v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03854351
Country None
Date 2016-2-18
Genbank Assembly Accession GCA_001563615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 2,425
Refseq Category na
Seq Rel Date 2016/02/18
Spanned Gaps 14
Species Taxid 47770
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 47770
Total Gap Length 1400
Translation Table 11
tRNA Count (total) 32
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSQY00000000.1