Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers LV36464
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 144
N50 Contigs 154,071 bp
Longest Contig 399,998 bp
Scaffold Count 136
N50 Scaffolds 158,975 bp
Longest Scaffold 399,998 bp
Genome Size 5,180,350 bp
Protein Count 5,001
Coding Density 88.31%
GC Percentage 50.77%
Ambiguous Bases 8
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156339v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04452068
Country Portugal
Date 2016-2-18
Genbank Assembly Accession GCA_001563395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 5,413
Refseq Category na
Seq Rel Date 2016/02/18
Spanned Gaps 8
Species Taxid 562
SSU Count 1
Submitter National Institute of Health Dr Ricardo Jorge
Taxid 562
Total Gap Length 490
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRXI00000000.1