Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers JPH264
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 211
N50 Contigs 99,475 bp
Longest Contig 281,116 bp
Scaffold Count 142
N50 Scaffolds 184,722 bp
Longest Scaffold 581,609 bp
Genome Size 5,109,471 bp
Protein Count 4,802
Coding Density 87.61%
GC Percentage 50.50%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156283v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03838475
Country None
Date 2016-2-17
Genbank Assembly Accession GCA_001562835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urinary tract
Latitude Longitude None
Molecule Count N/A
CDS Count 5,273
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 69
Species Taxid 562
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 562
Total Gap Length 6900
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSNY00000000.1