Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers SYRS1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 86
N50 Contigs 152,294 bp
Longest Contig 436,175 bp
Scaffold Count 86
N50 Scaffolds 152,294 bp
Longest Scaffold 436,175 bp
Genome Size 4,813,460 bp
Protein Count 4,566
Coding Density 88.07%
GC Percentage 50.77%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156276v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04297176
Country China: Shenyang
Date 2016-2-17
Genbank Assembly Accession GCA_001562765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 41.8 N 123.38 E
Molecule Count 10
CDS Count 4,924
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter Institute of Disease Control and Prevention, Academy of Military Medical Sciences
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNUK00000000.1