Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers SYAU1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 28.57
5S Count 5
16S Count 2
23S Count 2
tRNA Count 18
Contig Count 103
N50 Contigs 210,947 bp
Longest Contig 402,718 bp
Scaffold Count 103
N50 Scaffolds 210,947 bp
Longest Scaffold 402,718 bp
Genome Size 5,187,611 bp
Protein Count 4,898
Coding Density 88.23%
GC Percentage 50.34%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156271v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04296773
Country China: Shenyang
Date 2016-02-17
Genbank Assembly Accession GCA_001562715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude 41.8 N 123.38 E
Molecule Count 12
CDS Count 5,286
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter Institute of Disease Control and Prevention, Academy of Military Medical Sciences
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNUG00000000.1