Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers SYAB3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 28.57
5S Count 5
16S Count 2
23S Count 2
tRNA Count 18
Contig Count 106
N50 Contigs 197,201 bp
Longest Contig 582,842 bp
Scaffold Count 106
N50 Scaffolds 197,201 bp
Longest Scaffold 582,842 bp
Genome Size 5,241,410 bp
Protein Count 4,951
Coding Density 88.10%
GC Percentage 50.32%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156269v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04296771
Country China: Shenyang
Date 2016-2-17
Genbank Assembly Accession GCA_001562695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 41.8 N 123.38 E
Molecule Count 12
CDS Count 5,328
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter Institute of Disease Control and Prevention, Academy of Military Medical Sciences
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNUE00000000.1