Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 105438
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 25.0
5S Count 3
16S Count 4
23S Count 1
tRNA Count 18
Contig Count 86
N50 Contigs 204,373 bp
Longest Contig 622,961 bp
Scaffold Count 81
N50 Scaffolds 204,373 bp
Longest Scaffold 622,961 bp
Genome Size 5,226,940 bp
Protein Count 4,976
Coding Density 88.11%
GC Percentage 50.68%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156238v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03076178
Country USA: Fort Sam Houston
Date 2016-2-17
Genbank Assembly Accession GCA_001562385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source wound; right thigh
Latitude Longitude 29.46 N 98.41 W
Molecule Count N/A
CDS Count 5,408
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 5
Species Taxid 562
SSU Count 5
Submitter Miami University
Taxid 562
Total Gap Length 482
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LORC00000000.1