Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 108191
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 100
N50 Contigs 115,521 bp
Longest Contig 304,303 bp
Scaffold Count 98
N50 Scaffolds 115,521 bp
Longest Scaffold 304,303 bp
Genome Size 4,727,016 bp
Protein Count 4,483
Coding Density 88.04%
GC Percentage 50.81%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156237v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03076176
Country USA: Fort Sam Houston
Date 2016-2-17
Genbank Assembly Accession GCA_001562375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude 29.46 N 98.41 W
Molecule Count N/A
CDS Count 4,858
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 2
Species Taxid 562
SSU Count 2
Submitter Miami University
Taxid 562
Total Gap Length 222
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LORE00000000.1