Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 109497
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 103
N50 Contigs 222,697 bp
Longest Contig 709,668 bp
Scaffold Count 99
N50 Scaffolds 222,697 bp
Longest Scaffold 709,668 bp
Genome Size 5,221,557 bp
Protein Count 5,020
Coding Density 88.21%
GC Percentage 50.78%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156234v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03076175
Country USA: Fort Sam Houston
Date 2016-2-17
Genbank Assembly Accession GCA_001562345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude 29.46 N 98.41 W
Molecule Count N/A
CDS Count 5,456
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 4
Species Taxid 562
SSU Count 1
Submitter Miami University
Taxid 562
Total Gap Length 241
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LORD00000000.1