Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 105433
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 91
N50 Contigs 138,092 bp
Longest Contig 361,306 bp
Scaffold Count 89
N50 Scaffolds 138,092 bp
Longest Scaffold 361,306 bp
Genome Size 4,820,700 bp
Protein Count 4,523
Coding Density 88.17%
GC Percentage 50.74%
Ambiguous Bases 4
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM156233v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03076177
Country USA: Fort Sam Houston
Date 2016-2-17
Genbank Assembly Accession GCA_001562335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source wound
Latitude Longitude 29.46 N 98.41 W
Molecule Count N/A
CDS Count 4,882
Refseq Category na
Seq Rel Date 2016/02/17
Spanned Gaps 2
Species Taxid 562
SSU Count 1
Submitter Miami University
Taxid 562
Total Gap Length 224
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LORF00000000.1