Escherichia marmotae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia marmotae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia marmotae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia marmotae
NCBI Strain Identifiers B116
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002900365.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 52
N50 Contigs 293,789 bp
Longest Contig 886,806 bp
Scaffold Count 52
N50 Scaffolds 293,789 bp
Longest Scaffold 886,806 bp
Genome Size 4,576,704 bp
Protein Count 4,227
Coding Density 88.19%
GC Percentage 50.35%
Ambiguous Bases N/A
GTDB representative GCA_002900365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156167v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04273080
Country United Kingdom
Date 2016-02-16
Genbank Assembly Accession GCA_001561675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 52.57 N 1.8 W
Molecule Count N/A
CDS Count 4,366
Refseq Category na
Seq Rel Date 2016/02/16
Spanned Gaps 0
Species Taxid 1499973
SSU Count 1
Submitter Swansea University
Taxid 1499973
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRWW00000000.1