Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers B47
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 258
N50 Contigs 191,433 bp
Longest Contig 341,859 bp
Scaffold Count 258
N50 Scaffolds 191,433 bp
Longest Scaffold 341,859 bp
Genome Size 5,139,133 bp
Protein Count 5,006
Coding Density 88.20%
GC Percentage 50.77%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156141v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04273092
Country United Kingdom
Date 2016-2-16
Genbank Assembly Accession GCA_001561415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 52.57 N 1.8 W
Molecule Count N/A
CDS Count 5,391
Refseq Category na
Seq Rel Date 2016/02/16
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter Swansea University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRWG00000000.1