GCF_001561335.1
Escherichia coli
Isolate HQ 5S/16S/23S 20 tRNAs
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 3
23S Count 1
tRNA Count 20
Contig Count 180
N50 Contigs 180,826 bp
Longest Contig 448,808 bp
Scaffold Count 180
N50 Scaffolds 180,826 bp
Longest Scaffold 448,808 bp
Genome Size 5,148,197 bp
Protein Count 4,943
Coding Density 88.03%
GC Percentage 50.73%
Ambiguous Bases 0
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156133v1
Assembly Type na
Bioproject PRJNA224116
Biosample SAMN04273087
Country United Kingdom
Date 2016-02-16
Genbank Assembly Accession GCA_001561335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 52.57 N 1.8 W
Molecule Count N/A
CDS Count 5,175
Refseq Category na
Seq Rel Date 2016/02/16
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter Swansea University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRWC00000000.1