Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 1380
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 408
N50 Contigs 159,030 bp
Longest Contig 434,153 bp
Scaffold Count 408
N50 Scaffolds 159,030 bp
Longest Scaffold 434,153 bp
Genome Size 5,415,706 bp
Protein Count 5,422
Coding Density 88.02%
GC Percentage 50.74%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM156103v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04273069
Country Germany
Date 2016-2-16
Genbank Assembly Accession GCA_001561035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude 49.47 N 9.56 E
Molecule Count N/A
CDS Count 5,842
Refseq Category na
Seq Rel Date 2016/02/16
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter Swansea University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRVP00000000.1