Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers 09-4661
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 6
tRNA Count 20
Contig Count 93
N50 Contigs 403,281 bp
Longest Contig 731,944 bp
Scaffold Count 93
N50 Scaffolds 403,281 bp
Longest Scaffold 731,944 bp
Genome Size 5,195,946 bp
Protein Count 4,698
Coding Density 86.35%
GC Percentage 45.19%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155988v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04293498
Country Canada: British Columbia
Date 2016-2-11
Genbank Assembly Accession GCA_001559885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical sample from patient with gastroenteritis
Latitude Longitude None
Molecule Count N/A
CDS Count 4,944
Refseq Category na
Seq Rel Date 2016/02/11
Spanned Gaps 0
Species Taxid 670
SSU Count 13
Submitter Health Canada
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 127
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNTR00000000.1