Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium
NCBI Strain Identifiers MHM112
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 91
N50 Contigs 99,633 bp
Longest Contig 340,429 bp
Scaffold Count 91
N50 Scaffolds 99,633 bp
Longest Scaffold 340,429 bp
Genome Size 4,678,302 bp
Protein Count 4,423
Coding Density 87.63%
GC Percentage 52.34%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155985v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04334594
Country USA: Gainesville
Date 2016-2-11
Genbank Assembly Accession GCA_001559855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source derived from clinical isolate ATCC 14028
Latitude Longitude 29.638322507797636 N 82.35176783055067 W
Molecule Count N/A
CDS Count 4,727
Refseq Category na
Seq Rel Date 2016/02/11
Spanned Gaps 0
Species Taxid 28901
SSU Count 4
Submitter University of Florida
Taxid 90371
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LONA00000000.1