Citrobacter_A amalonaticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter_A; s__Citrobacter_A amalonaticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter amalonaticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter amalonaticus
NCBI Strain Identifiers FDAARGOS_122
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460855.1)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 16.67
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 1
N50 Contigs 4,904,719 bp
Longest Contig 4,904,719 bp
Scaffold Count 1
N50 Scaffolds 4,904,719 bp
Longest Scaffold 4,904,719 bp
Genome Size 4,904,719 bp
Protein Count 4,485
Coding Density 88.71%
GC Percentage 53.73%
Ambiguous Bases N/A
GTDB representative GCA_900460855.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM155907v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996265
Country USA: DC
Date 2018-2-26
Genbank Assembly Accession GCA_001559075.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count 1
CDS Count 4,634
Refseq Category na
Seq Rel Date 2018/02/26
Spanned Gaps 0
Species Taxid 35703
SSU Count 7
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 35703
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None