Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7
NCBI Strain Identifiers JEONG-1266
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 2
N50 Contigs 5,478,683 bp
Longest Contig 5,478,683 bp
Scaffold Count 2
N50 Scaffolds 5,478,683 bp
Longest Scaffold 5,478,683 bp
Genome Size 5,574,593 bp
Protein Count 5,381
Coding Density 87.44%
GC Percentage 50.45%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM155899v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04191546
Country USA: FL
Date 2016-5-20
Genbank Assembly Accession GCA_001558995.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fecal
Latitude Longitude None
Molecule Count 2
CDS Count 5,816
Refseq Category na
Seq Rel Date 2016/05/20
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter US Food and Drug Administration
Taxid 83334
Total Gap Length 0
Translation Table 11
tRNA Count (total) 106
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None