Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers ATCC 17802
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1,288 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 14
16S Count 14
23S Count 14
tRNA Count 20
Contig Count 2
N50 Contigs 3,286,802 bp
Longest Contig 3,286,802 bp
Scaffold Count 2
N50 Scaffolds 3,286,802 bp
Longest Scaffold 3,286,802 bp
Genome Size 5,152,461 bp
Protein Count 4,545
Coding Density 85.61%
GC Percentage 45.33%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM155849v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996250
Country Japan
Date 2018-01-31
Genbank Assembly Accession GCA_001558495.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Shirasu
Latitude Longitude None
Molecule Count 2
CDS Count 4,908
Refseq Category na
Seq Rel Date 2018/01/31
Spanned Gaps 0
Species Taxid 670
SSU Count 14
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 134
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None