Staphylococcus saprophyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus saprophyticus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus saprophyticus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus saprophyticus
NCBI Strain Identifiers FDAARGOS_168
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000010125.1)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 3
N50 Contigs 2,583,619 bp
Longest Contig 2,583,619 bp
Scaffold Count 3
N50 Scaffolds 2,583,619 bp
Longest Scaffold 2,583,619 bp
Genome Size 2,650,138 bp
Protein Count 2,588
Coding Density 83.60%
GC Percentage 33.21%
Ambiguous Bases N/A
GTDB representative GCA_000010125.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM155827v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996313
Country USA:DC
Date 2018-2-12
Genbank Assembly Accession GCA_001558275.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count 3
CDS Count 2,546
Refseq Category na
Seq Rel Date 2018/02/12
Spanned Gaps 0
Species Taxid 29385
SSU Count 6
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 29385
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None