Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio jasicida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio jasicida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio jasicida
NCBI Strain Identifiers NCCB 100079
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000400365.1)
Genome Characteristics
CheckM Completeness 99.73%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 12
16S Count 15
23S Count 1
tRNA Count 20
Contig Count 136
N50 Contigs 179,309 bp
Longest Contig 390,702 bp
Scaffold Count 136
N50 Scaffolds 179,309 bp
Longest Scaffold 390,702 bp
Genome Size 5,988,434 bp
Protein Count 5,381
Coding Density 86.39%
GC Percentage 45.16%
Ambiguous Bases N/A
GTDB representative GCA_000400365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155809v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04279322
Country None
Date 2016-2-10
Genbank Assembly Accession GCA_001558095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,501
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 766224
SSU Count 21
Submitter University of Cambridge
Taxid 766224
Total Gap Length 0
Translation Table 11
tRNA Count (total) 115
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNQW00000000.1