Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio owensii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio harveyi
NCBI Strain Identifiers CUB2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000817815.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 13
23S Count 1
tRNA Count 20
Contig Count 106
N50 Contigs 324,683 bp
Longest Contig 532,254 bp
Scaffold Count 106
N50 Scaffolds 324,683 bp
Longest Scaffold 532,254 bp
Genome Size 6,184,161 bp
Protein Count 5,560
Coding Density 86.39%
GC Percentage 45.47%
Ambiguous Bases N/A
GTDB representative GCA_000817815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155794v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04279316
Country Cuba: Varadero
Date 2016-2-10
Genbank Assembly Accession GCA_001557945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Shore seawater
Latitude Longitude 23.1996637 N 81.1590006 W
Molecule Count N/A
CDS Count 5,611
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 669
SSU Count 23
Submitter University of Cambridge
Taxid 669
Total Gap Length 0
Translation Table 11
tRNA Count (total) 141
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNRB00000000.1