Photobacterium leiognathi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi
NCBI Strain Identifiers CUB1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000950415.1)
Genome Characteristics
CheckM Completeness 99.4%
CheckM Contamination 0.59%
CheckM Strain Heterogeneity 0.0
5S Count 13
16S Count 1
23S Count 6
tRNA Count 20
Contig Count 90
N50 Contigs 165,852 bp
Longest Contig 372,052 bp
Scaffold Count 90
N50 Scaffolds 165,852 bp
Longest Scaffold 372,052 bp
Genome Size 4,629,225 bp
Protein Count 4,077
Coding Density 85.40%
GC Percentage 41.03%
Ambiguous Bases N/A
GTDB representative GCA_000950415.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155775v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04279315
Country Cuba: Varadero
Date 2016-2-10
Genbank Assembly Accession GCA_001557755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Shore seawater
Latitude Longitude 23.1996637 N 81.1590006 W
Molecule Count N/A
CDS Count 4,024
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 553611
SSU Count 20
Submitter University of Cambridge
Taxid 553611
Total Gap Length 0
Translation Table 11
tRNA Count (total) 196
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNRC00000000.1