Microbacterium oxydans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium oxydans
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium sp. CCH5-D1
NCBI Strain Identifiers CCH5-D1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006540085.1)
Genome Characteristics
CheckM Completeness 95.31%
CheckM Contamination 1.09%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 326
N50 Contigs 25,250 bp
Longest Contig 143,806 bp
Scaffold Count 326
N50 Scaffolds 25,250 bp
Longest Scaffold 143,806 bp
Genome Size 3,986,565 bp
Protein Count 4,038
Coding Density 92.80%
GC Percentage 68.27%
Ambiguous Bases N/A
GTDB representative GCA_006540085.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155733v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04299473
Country USA: Ohio
Date 2016-2-10
Genbank Assembly Accession GCA_001557335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hospital shower hose biofilm
Latitude Longitude 40.107208420793235 N 82.18359231948853 W
Molecule Count N/A
CDS Count 3,941
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 1768780
SSU Count 1
Submitter U.S. Environmental Protection Agency
Taxid 1768780
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSJW00000000.1