Mycobacterium phocaicum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium phocaicum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycolicibacterium; s__Mycolicibacterium mucogenicum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycolicibacterium; s__Mycolicibacterium mucogenicum
NCBI Strain Identifiers CCH12-A2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_005670655.1)
Genome Characteristics
CheckM Completeness 96.92%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 534
N50 Contigs 41,670 bp
Longest Contig 122,071 bp
Scaffold Count 534
N50 Scaffolds 41,670 bp
Longest Scaffold 122,071 bp
Genome Size 6,470,571 bp
Protein Count 6,558
Coding Density 90.71%
GC Percentage 66.86%
Ambiguous Bases N/A
GTDB representative GCA_005670655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155704v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04299488
Country USA: Ohio
Date 2016-02-10
Genbank Assembly Accession GCA_001557045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hospital shower hose biofilm
Latitude Longitude 40.107208420793235 N 82.18359231948853 W
Molecule Count N/A
CDS Count 6,445
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 56689
SSU Count 1
Submitter U.S. Environmental Protection Agency
Taxid 56689
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSKL00000000.1