Dermacoccus nishinomiyaensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Dermatophilaceae; g__Dermacoccus; s__Dermacoccus nishinomiyaensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Dermacoccaceae; g__Dermacoccus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Dermacoccaceae; g__Dermacoccus; s__Dermacoccus sp. CCH2-D9
NCBI Strain Identifiers CCH2-D9
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900447535.1)
Genome Characteristics
CheckM Completeness 91.89%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 149
N50 Contigs 37,585 bp
Longest Contig 129,617 bp
Scaffold Count 149
N50 Scaffolds 37,585 bp
Longest Scaffold 129,617 bp
Genome Size 2,787,014 bp
Protein Count 2,582
Coding Density 88.32%
GC Percentage 69.16%
Ambiguous Bases N/A
GTDB representative GCA_900447535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155679v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04299470
Country USA: Ohio
Date 2016-2-10
Genbank Assembly Accession GCA_001556795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hospital shower hose biofilm
Latitude Longitude 40.107208420793235 N 82.18359231948853 W
Molecule Count N/A
CDS Count 2,522
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 1768779
SSU Count 1
Submitter U.S. Environmental Protection Agency
Taxid 1768779
Total Gap Length 0
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSJT00000000.1