Acidovorax_D sp000302535
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Acidovorax_D; s__Acidovorax_D sp000302535
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__Acidovorax delafieldii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__Acidovorax delafieldii
NCBI Strain Identifiers CCH3-G3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000302535.1)
Genome Characteristics
CheckM Completeness 96.53%
CheckM Contamination 0.78%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 680
N50 Contigs 16,768 bp
Longest Contig 73,538 bp
Scaffold Count 680
N50 Scaffolds 16,768 bp
Longest Scaffold 73,538 bp
Genome Size 5,721,016 bp
Protein Count 5,645
Coding Density 88.79%
GC Percentage 64.77%
Ambiguous Bases N/A
GTDB representative GCA_000302535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155614v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04299431
Country USA: Ohio
Date 2016-2-10
Genbank Assembly Accession GCA_001556145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hospital shower hose biofilm
Latitude Longitude 40.107208420793235 N 82.18359231948853 W
Molecule Count N/A
CDS Count 5,544
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 47920
SSU Count 1
Submitter U.S. Environmental Protection Agency
Taxid 47920
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSIH00000000.1