Pseudoxanthomonas_A mexicana
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas_A; s__Pseudoxanthomonas_A mexicana
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas; s__Pseudoxanthomonas mexicana
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas; s__Pseudoxanthomonas mexicana
NCBI Strain Identifiers CCH9-G4
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 96.42%
CheckM Contamination 1.08%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 108
N50 Contigs 87,542 bp
Longest Contig 219,069 bp
Scaffold Count 108
N50 Scaffolds 87,542 bp
Longest Scaffold 219,069 bp
Genome Size 3,942,209 bp
Protein Count 3,649
Coding Density 90.69%
GC Percentage 66.55%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155610v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04299429
Country USA: Ohio
Date 2016-2-10
Genbank Assembly Accession GCA_001556105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hospital shower hose biofilm
Latitude Longitude 40.107208420793235 N 82.18359231948853 W
Molecule Count N/A
CDS Count 3,612
Refseq Category representative genome
Seq Rel Date 2016/02/10
Spanned Gaps 0
Species Taxid 128785
SSU Count 1
Submitter U.S. Environmental Protection Agency
Taxid 128785
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSIF00000000.1