Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 852
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 83
N50 Contigs 234,086 bp
Longest Contig 483,819 bp
Scaffold Count 83
N50 Scaffolds 234,086 bp
Longest Scaffold 483,819 bp
Genome Size 5,144,905 bp
Protein Count 4,896
Coding Density 88.29%
GC Percentage 50.68%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155549v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04273059
Country Germany
Date 2016-2-9
Genbank Assembly Accession GCA_001555495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude 49.47 N 9.56 E
Molecule Count N/A
CDS Count 5,307
Refseq Category na
Seq Rel Date 2016/02/09
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter Swansea University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNPW00000000.1