Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers KCJ852
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.52%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 298
N50 Contigs 32,484 bp
Longest Contig 149,497 bp
Scaffold Count 298
N50 Scaffolds 32,484 bp
Longest Scaffold 149,497 bp
Genome Size 4,724,831 bp
Protein Count 4,500
Coding Density 88.65%
GC Percentage 50.87%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155429v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04396104
Country USA: FL
Date 2016-2-9
Genbank Assembly Accession GCA_001554295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Uterus
Latitude Longitude None
Molecule Count N/A
CDS Count 4,868
Refseq Category na
Seq Rel Date 2016/02/09
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter US Food and Drug Administration
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSFT00000000.1