Peptoniphilus_A vaginalis
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Tissierellales; f__Peptoniphilaceae; g__Peptoniphilus_A; s__Peptoniphilus_A vaginalis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Tissierellia; o__Tissierellales; f__Peptoniphilaceae; g__Peptoniphilus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Tissierellia; o__Tissierellales; f__Peptoniphilaceae; g__Peptoniphilus; s__Peptoniphilus sp. DNF00840
NCBI Strain Identifiers DNF00840
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900176605.1)
Genome Characteristics
CheckM Completeness 99.3%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 91
N50 Contigs 50,038 bp
Longest Contig 126,765 bp
Scaffold Count 72
N50 Scaffolds 56,550 bp
Longest Scaffold 126,765 bp
Genome Size 1,777,928 bp
Protein Count 1,649
Coding Density 89.03%
GC Percentage 34.29%
Ambiguous Bases N/A
GTDB representative GCA_900176605.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM155312v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04324901
Country None
Date 2016-2-8
Genbank Assembly Accession GCA_001553125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 1,648
Refseq Category na
Seq Rel Date 2016/02/08
Spanned Gaps 19
Species Taxid 1477000
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 1477000
Total Gap Length 1900
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSDH00000000.1