Smaragdicoccus niigatensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Smaragdicoccus; s__Smaragdicoccus niigatensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Smaragdicoccus; s__Smaragdicoccus niigatensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Smaragdicoccus; s__Smaragdicoccus niigatensis; x__Smaragdicoccus niigatensis DSM 44881 = NBRC 103563
NCBI Strain Identifiers NBRC 103563
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000380645.1)
Genome Characteristics
CheckM Completeness 98.66%
CheckM Contamination 1.2%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 73
N50 Contigs 134,803 bp
Longest Contig 262,759 bp
Scaffold Count 73
N50 Scaffolds 134,803 bp
Longest Scaffold 262,759 bp
Genome Size 5,310,895 bp
Protein Count 5,162
Coding Density 92.81%
GC Percentage 64.35%
Ambiguous Bases N/A
GTDB representative GCA_000380645.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM155279v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00046495
Country None
Date 2016-2-6
Genbank Assembly Accession GCA_001552795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,101
Refseq Category na
Seq Rel Date 2016/02/06
Spanned Gaps 0
Species Taxid 359359
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1123258
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BCRU00000000.1